PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5849_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 450aa    MW: 50210.7 Da    PI: 7.1648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5849_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.93.5e-13103125426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C ++++tGtCk+G++CkF+H+
  Neem_5849_f_3 103 EDCAYYMKTGTCKFGSNCKFNHP 125
                    89********************8 PP

2zf-CCCH30.37.4e-10157177525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C++++rtG CkyG  C+++H
  Neem_5849_f_3 157 ECKYYLRTGGCKYGKACRYNH 177
                    7******************** PP

3zf-CCCH39.96.9e-13200224226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C++++r+G CkyG++C+F+H+
  Neem_5849_f_3 200 GEKECPYYMRNGSCKYGANCRFNHP 224
                    7899********************9 PP

4zf-CCCH28.23.3e-09335361127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++f++tG Cky ++Ck++H++
  Neem_5849_f_3 335 PGQPECSYFLKTGDCKYKSNCKYHHPK 361
                    5789*********************96 PP

5zf-CCCH36.77.1e-12383406326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C++++r+G+Ck+G+ CkF H+
  Neem_5849_f_3 383 QNICSYYSRYGICKFGPACKFDHP 406
                    679********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.02E-798127IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-699126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.11299127IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-11103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5105124IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042152180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5156181IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7157177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5158178IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7198225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324198226IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10200224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5204223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333334362IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4334361IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6336361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5338363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6378406IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5380407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84380408IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9383406IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4385405IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MELSETIPVP SLHHENPKLE LGLQSSSPKS DLDPAPSDLN HATELEDELQ NLDLREMEER  60
YSSKEEESES DDNNKIKSEV QRENENGNQI RKRYPYPVRP EAEDCAYYMK TGTCKFGSNC  120
KFNHPIRRKN QATKEKVRER EESAERPAQS QSQSQIECKY YLRTGGCKYG KACRYNHTKA  180
KTSVTPILEL NFLGLPIRPG EKECPYYMRN GSCKYGANCR FNHPDPTAVG ISDSPSGYAN  240
GGSLSSKAAS QASLGSWSSP RALNETSPFV PMMFSPSQGV PSQNSEWNGY QAPLYPPERS  300
MQSSPTYVMN NPALETNVYT NHQPQMLVDE FPERPGQPEC SYFLKTGDCK YKSNCKYHHP  360
KNRISKSPPC ALSDKGLPLR PDQNICSYYS RYGICKFGPA CKFDHPINTA ASSTECGPDP  420
PTSFGNSATR QETVVGGTGN GSDNKIQQPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440009.10.0hypothetical protein CICLE_v10019979mg
SwissprotQ9STM41e-152C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV4VKL30.0V4VKL3_9R
STRINGVIT_17s0000g09990.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-144C3H family protein